```{include} ../README.md
:relative-docs: ..
```

```{toctree}
:maxdepth: 1
:caption: Project

CONTRIBUTING
CHANGELOG
LICENSE
NOTICE
THIRD_PARTY_LICENSES
```

```{toctree}
:maxdepth: 1
:caption: Usage

usage/reader
usage/roi
usage/config
```

```{toctree}
:maxdepth: 1
:caption: Analysis

analysis/leem
analysis/xas
analysis/xps
analysis/sees
analysis/desp
```

```{toctree}
:maxdepth: 1
:caption: API

api/reader
api/roi
api/analyzer
```

```{toctree}
:maxdepth: 1
:caption: Operation

operation/stitch
operation/drift
```

```{toctree}
:maxdepth: 1
:caption: Annotation

annotation/metatext
annotation/scalebar
annotation/drawroi
```
```{toctree}
:maxdepth: 1
:caption: Reference

ref/reader_ref
ref/roi_ref
ref/analyzer_ref
ref/config_ref
ref/workflow_ref
ref/operation_ref
ref/annotation_ref
ref/metadata_ref
ref/metainfo_ref
ref/fullfield_ref
ref/spectra_ref
ref/leem_ref
ref/xas_ref
ref/sees_ref
ref/desp_ref
ref/xps_ref
```

## Indices and tables

* {ref}`genindex`
* {ref}`modindex`
* {ref}`search`