Index

A

absolute_shifts() (in module pyleem.operation.drift) analyze() (pyleem.analysis.desp.DESPCalibration method) (pyleem.analysis.sees.SEESCalibration method) (pyleem.analysis.xps.XPSCalibration method) (pyleem.analyzer.Analyzer method) analyze_profile() (pyleem.analysis.sees.SEESAnalyzer method) Analyzer (class in pyleem.analyzer)

annotate_image() (pyleem.analysis.desp.DESPAnalyzer method) (pyleem.analyzer.Analyzer method) annotate_metadata() (pyleem.annotation.metatext.MetadataTextMixin method) annotate_roi() (pyleem.annotation.drawroi.ROIAnnotationMixin method) annotate_scalebar() (pyleem.annotation.scalebar.ScaleBarMixin method) apply_shifts() (in module pyleem.operation.drift) AreaROI (class in pyleem.roi)

B

build_analyzer() (pyleem.workflow.Workflow method)

build_readers() (pyleem.workflow.Workflow method) build_roi() (pyleem.workflow.Workflow method)

C

calculate_drift() (in module pyleem.operation.drift) (pyleem.analysis.fullfield.FullFieldBase method) choose_max_workers() (in module pyleem.operation.drift) chunk_pairs() (in module pyleem.operation.drift)

Config (class in pyleem.config) content (pyleem.config.Config property) convert_win_filetime() (in module pyleem.metadata) correct_drift() (pyleem.analysis.fullfield.FullFieldBase method) crop_center() (in module pyleem.operation.drift)

D

DESPAnalyzer (class in pyleem.analysis.desp) DESPAnalyzerBase (class in pyleem.analysis.desp) DESPCalibration (class in pyleem.analysis.desp) disk_kernel() (in module pyleem.analysis.desp)

draw_line_roi() (in module pyleem.annotation.drawroi) draw_oval_roi() (in module pyleem.annotation.drawroi) draw_polygon_roi() (in module pyleem.annotation.drawroi) draw_rect_roi() (in module pyleem.annotation.drawroi) draw_roi() (in module pyleem.annotation.drawroi)

E

eval_radii() (in module pyleem.analysis.desp)

F

filter_image() (in module pyleem.operation.drift) filter_images() (in module pyleem.operation.drift) find_onset() (in module pyleem.analyzer) find_stitch_points() (in module pyleem.operation.stitch) fit() (pyleem.analysis.xps.XPSAnalyzer method) fit_range_mask() (in module pyleem.analysis.xps) fit_xps() (in module pyleem.analysis.xps) format_line() (in module pyleem.annotation.metatext) format_lines() (in module pyleem.annotation.metatext)

format_unit() (in module pyleem.annotation.metatext) format_value() (in module pyleem.annotation.metatext) frame_pairs() (in module pyleem.operation.drift) fromfile() (pyleem.roi.LineROI method) (pyleem.roi.NoROI method) (pyleem.roi.OvalROI method) (pyleem.roi.PolygonROI method) (pyleem.roi.RectROI method) (pyleem.roi.ROI method) FullFieldBase (class in pyleem.analysis.fullfield)

G

get_autolevel() (pyleem.analyzer.Analyzer method) get_binding_energy() (pyleem.analysis.xps.XPSAnalyzer method) get_energy_convert_function() (pyleem.analysis.desp.DESPAnalyzerBase method) get_intensities() (pyleem.analysis.fullfield.FullFieldBase method) get_measurement() (pyleem.analyzer.Analyzer method) get_metadata() (pyleem.analyzer.Analyzer method) get_metadata_fixed_header() (in module pyleem.metadata) get_metadata_list() (in module pyleem.workflow) get_metadata_text() (pyleem.annotation.metatext.MetadataTextMixin method) get_pixel() (pyleem.analyzer.Analyzer method) get_processed_image() (pyleem.analysis.desp.DESPAnalyzerBase method) (pyleem.analysis.fullfield.FullFieldBase method) (pyleem.analyzer.Analyzer method)

get_processed_profile() (pyleem.analysis.sees.SEESBase method) get_profile() (pyleem.analyzer.Analyzer method) get_radius() (in module pyleem.analysis.desp) get_radius_convolve() (in module pyleem.analysis.desp) get_raw_image() (pyleem.analyzer.Analyzer method) get_reader_paths() (in module pyleem.workflow) get_saved_result() (pyleem.workflow.Workflow method) get_scalebar_parameter() (pyleem.annotation.scalebar.ScaleBarMixin method) get_time_intervals() (in module pyleem.reader)

H

height (pyleem.roi.OvalROI property) (pyleem.roi.RectROI property)

I

image (pyleem.reader.Reader property) (pyleem.reader.UViewReader property)

image_to_canvas() (in module pyleem.operation.drift) is_tag_in_range() (in module pyleem.metadata)

L

LEEMIVAnalyzer (class in pyleem.analysis.leem)

LineROI (class in pyleem.roi) load_config() (in module pyleem.config)

M

mask() (pyleem.roi.AreaROI method) (pyleem.roi.OvalROI method) (pyleem.roi.PolygonROI method) (pyleem.roi.RectROI method) match_score() (in module pyleem.analysis.desp) measure() (pyleem.roi.AreaROI method) (pyleem.roi.LineROI method) (pyleem.roi.NoROI method) (pyleem.roi.ROI method) measure_values() (in module pyleem.roi) metadata (pyleem.reader.Reader property) MetadataTextMixin (class in pyleem.annotation.metatext) module pyleem.analysis.desp pyleem.analysis.fullfield pyleem.analysis.leem pyleem.analysis.sees pyleem.analysis.spectra pyleem.analysis.xas pyleem.analysis.xps pyleem.analyzer pyleem.annotation.drawroi pyleem.annotation.metatext pyleem.annotation.scalebar pyleem.config pyleem.metadata pyleem.metainfo pyleem.operation.drift pyleem.operation.stitch pyleem.reader pyleem.roi pyleem.workflow

N

NoROI (class in pyleem.roi)

O

OvalROI (class in pyleem.roi)

P

parabola_fit() (in module pyleem.analysis.desp) parameter_constraint() (in module pyleem.analysis.xps) parameter_estimation() (in module pyleem.analysis.xps) parse_leem_data() (in module pyleem.metadata) plot_energy() (pyleem.analysis.desp.DESPAnalyzer method) plot_image() (pyleem.analyzer.Analyzer method) (pyleem.reader.Reader method) plot_intensity() (pyleem.analysis.leem.LEEMIVAnalyzer method) (pyleem.analysis.xas.XASAnalyzer method) plot_profile() (pyleem.analysis.sees.SEESAnalyzer method) (pyleem.analysis.xps.XPSAnalyzer method) PolygonROI (class in pyleem.roi) preprocess_image() (in module pyleem.analysis.desp) profile() (pyleem.roi.AreaROI method) (pyleem.roi.LineROI method) (pyleem.roi.NoROI method) (pyleem.roi.ROI method) pseudo_voigt_fits() (in module pyleem.analysis.xps) pyleem.analysis.desp module pyleem.analysis.fullfield module pyleem.analysis.leem module pyleem.analysis.sees module pyleem.analysis.spectra module

pyleem.analysis.xas module pyleem.analysis.xps module pyleem.analyzer module pyleem.annotation.drawroi module pyleem.annotation.metatext module pyleem.annotation.scalebar module pyleem.config module pyleem.metadata module pyleem.metainfo module pyleem.operation.drift module pyleem.operation.stitch module pyleem.reader module pyleem.roi module pyleem.workflow module

R

read_files() (in module pyleem.reader) read_metabytes() (pyleem.reader.UViewReader method) Reader (class in pyleem.reader) RectROI (class in pyleem.roi) register_pairs() (in module pyleem.operation.drift) register_pairs_threaded() (in module pyleem.operation.drift)

registration_weight() (in module pyleem.operation.drift) relative_shifts() (in module pyleem.operation.drift) resolve_path() (in module pyleem.workflow) ROI (class in pyleem.roi) ROIAnnotationMixin (class in pyleem.annotation.drawroi) ROIMeasurement (class in pyleem.roi) run() (pyleem.workflow.Workflow method)

S

save() (pyleem.workflow.Workflow method) save_config() (in module pyleem.config) scalebar_width() (in module pyleem.annotation.scalebar) ScaleBarMixin (class in pyleem.annotation.scalebar) SEES_onset() (in module pyleem.analysis.sees) SEESAnalyzer (class in pyleem.analysis.sees)

SEESBase (class in pyleem.analysis.sees) SEESCalibration (class in pyleem.analysis.sees) shift_canvas() (in module pyleem.operation.drift) shirley_background() (in module pyleem.analysis.xps) SpectraBase (class in pyleem.analysis.spectra) stitch_profiles() (in module pyleem.operation.stitch) (pyleem.analysis.spectra.SpectraBase method)

T

tofile() (pyleem.roi.LineROI method) (pyleem.roi.NoROI method) (pyleem.roi.OvalROI method) (pyleem.roi.PolygonROI method) (pyleem.roi.RectROI method) (pyleem.roi.ROI method)

U

update_metadata() (pyleem.reader.Reader method)

UViewReader (class in pyleem.reader)

V

validate() (pyleem.roi.LineROI method) (pyleem.roi.OvalROI method) (pyleem.roi.PolygonROI method) (pyleem.roi.RectROI method) (pyleem.roi.ROI method)

validate_roi_type() (pyleem.roi.ROI method)

W

width (pyleem.roi.OvalROI property) (pyleem.roi.RectROI property)

with_changes() (pyleem.config.Config method) Workflow (class in pyleem.workflow)

X

XASAnalyzer (class in pyleem.analysis.xas) xps_background() (in module pyleem.analysis.xps)

XPSAnalyzer (class in pyleem.analysis.xps) XPSCalibration (class in pyleem.analysis.xps)